1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttttcttggatttattggttaatcttttgcattctgttggtaatttatatacattcttcttccctatgaagtattccaacactcttcctatgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTAGACAACGGGAAGCTAAAAGAGCTGCCTCAATCAACTTTGT
species | Glycine max |
transcript | GLYMA10G08560.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACA GTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTAEST: gi|254345934|gb|GR859581.1|GR859581
genomic: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAgtaagccaac ... atgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTA
EST: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACA GTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTAEST: gi|13788195|gb|BG650787.1|BG650787
genomic: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAgtaagccaac ... atgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTA
EST: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACA GTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTAEST: gi|31462972|gb|CD405000.1|CD405000
genomic: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAgtaagccaac ... atgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTA
EST: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACA GTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTA
genomic: CTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAgtaagccaac ... atgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTA
ttatatacattcttcttccctatgaagtattccaacactcttcctatgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTAGACAACGGGAAGCTAAAAGAGCTGCCTCAATCAACTTTGT
ctcttcctatgttc CT-rich tract
aagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcttggatttattggttaatcttttgcattctgttggtaatttatatacattcttcttccctatgaagtattccaacactcttcctatgttcatagGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTAGACAACGGGAAGCTAAAAGAGCTGCCTCAATCAACTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - gttggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc