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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgaaagtcctaaccctgctttatttgctttttagatatttgcttactgtttatttgatctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA

Basic information

species Glycine max
transcript GLYMA10G07610.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 9
-----------------gtatgcttgaaagtccta-accctgctttatttgctttttagatatttgc-ttactgtttatttgatctgtgtttat---tagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA
                 |     || || |||  |        || ||||  |  |   || |     | |||    || | |  | |  |  |   ||||||||||| |||||| || | || ||||||||||||||  | |||||||| || || |||||||| || ||  | || ||||| ||||||||| ||||||
gagaatgttaagatgttgccccattcaaggtcacatgtataagttgatttaatcatgtaatgtccatgtcacttaacatgttaggtattctcctctgtagGTTGCAATTATGAAAAGTCTGCGCCATCCAAACATTGTCCTTTTTATGGGTGCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAA

upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
--------------gtatgcttgaa-agtcctaaccctgctttatt-tgctttttagatatttgcttactgtttatttgat------ctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA
              |  |  ||||| |    ||    ||| || || |    ||  ||| ||   |||   |||| |  ||       | |  ||  ||||||||||| |||| | |||| || ||||| ||||||||| |  ||||||| || ||||||||||| |||||| | |||||||| || |||||  ||||||
atacttaagatgttgcctcattgaagaactatatatatgcattgttgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA

upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 8
gtatgcttgaaagtcctaaccctgcttt-----atttgctttttagatatttgcttactgtttatttgatctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA
||   |    ||    |   | || |||     ||   ||| ||  ||   ||  | |  |    |||||  |    | | ||||||| |||||||||||  | || || || ||||||||| | || ||||| || |||||||| ||||| || || ||||| || ||||||||||| ||||
gtgcacaaataaaattttctcttgattttggtaatgaacttgttgtattaatgtctccaatgatcttgattcg---ctgtcagGTTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttatttgctttttagatatttgcttactgtttatttgatctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA
           tttttagatattt  TA-rich tract