1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatttacataaactcctcaagctttagtccttttcttcaatttacttggccattaatactatcattctagagtctcttgattttcatgtgatcttatgaatataagtataataactcttgcatacttcattgtatttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTTTGTAAGAAGATTGATTGCATGCCTTGGGAGGGCATCAATCATTGTATT
species | Glycine max |
transcript | GLYMA10G07420.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATG CATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTEST: gi|9204536|gb|BE330760.1|BE330760
genomic: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGgtaatttaca ... ttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCT
EST: ACCTTCTCAAGAGGTTCCCCATTCCTTATG CATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTEST: gi|193423332|gb|FK389839.1|FK389839
genomic: ACCTTCTCAAGAGGTTCCCCATTCCTTATGgtaatttaca ... ttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCT
EST: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATG CATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTEST: gi|207823088|gb|GD796997.1|GD796997
genomic: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGgtaatttaca ... ttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCT
EST: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATG CATTATACCTCACCTCAGTGTCTATTTTGGCTGGCTTCTGGGG
genomic: TCTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGgtaatttaca ... ttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGG
atcttatgaatataagtataataactcttgcatacttcattgtatttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTTTGTAAGAAGATTGATTGCATGCCTTGGGAGGGCATCAATCATTGTATT
taataac putative branch site (score: 1)
tatttcttt putative PPT
atgaatataagtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttacataaactcctcaagctttagtccttttcttcaatttacttggccattaatactatcattctagagtctcttgattttcatgtgatcttatgaatataagtataataactcttgcatacttcattgtatttctttgcagCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGCTTCTGGGGACAATTCTTTGTAAGAAGATTGATTGCATGCCTTGGGAGGGCATCAATCATTGTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG