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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatttatacggagtgaatcttttcttttaatattacagcattgattttgaattttgtatattcttaaatgttatcttatgccttgtttctcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATG

Basic information

species Glycine max
transcript GLYMA10G05490.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------gtgagattt-atacggagtgaatct-------tttcttttaatattacagcattgattttgaattttgtatattcttaa--atgtta-tcttatgccttgtttctcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATG
                            |    | | | || || ||||| |       ||| | ||   ||  |   ||| ||||||||   |     || | ||  || |||  ||| |      |   | || || |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| | ||||| |||||||
gtgaggtttgcattatataatagagcaatacattctgaaactgaatgaatttcctttaatttttctttgcatctctagattcattttgaacactcctagttgtcaagcatattaaccttgtaatggttcctttaacctcagTTCTTCGAGTTTGGGATGTGCTTCTATTTGAAGGAAACCGTGTTATGCTATTTCGGACAGCACTTGCTTTGATGGAGTTATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193375747|gb|FK341720.1|FK341720
EST:     TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG                         TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
genomic: TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta ... tcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
EST: gi|193493307|gb|FK460057.1|FK460057
EST:     TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG                         TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT
genomic: TGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTGgtgagattta ... tcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaattttgtatattcttaaatgttatcttatgccttgtttctcaatcttagTTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATG
                                    ccttgtttctc  CT-rich tract
     aattttgtatattctt  TA-rich tract