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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatatcatctcctagcaccagttagtacaatggaatatggacttcacaaccaacaaaattgacttctaatttctgaaatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGATTAGTTTCATTGCTTAAGATACTTAGTTCCTTTTTGACAAGGATCCGTTG

Basic information

species Glycine max
transcript GLYMA10G05320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05320.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g38710.1 (Oryza sativa), 3'ss of exon 10
gtgacatatcatctcctagcaccagttagtacaatggaata--tggacttcacaaccaacaaaattgactt----ctaatttc------tgaaatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGATTAGTTTCATTGCT-TAAGATACTTAGTTCCTTTTTG-ACAAGGATCCGTTG
  |  |   || ||  |   |     | ||||    | ||      ||| || |||   |||| |    ||    || ||         |||    |||||||| |||||||| || |||||||| ||||| | ||||||||||||| |||||  ||    | | | ||| | ||  ||       |   || ||  || |   
--gcaagggcagctagtgtgattgtgttgtactcatgtatggtcatactccataacatgcaaattcctttttgtgctgatcatcaatgatgatgccttgcagGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTTGATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGC--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725303|gb|BW651497.1|BW651497
EST:     TACATACCCTTGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAG                         GAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT
genomic: TACATACCCTCGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAGgtgacatatc ... aatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT
EST: gi|208248279|gb|GE044476.1|GE044476
EST:     TACATACCCTTGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAG                         GAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT
genomic: TACATACCCTCGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAGgtgacatatc ... aatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT
EST: gi|9205421|gb|BE331645.1|BE331645
EST:     TACATACCCTCGTCAATGACATGTGACCACCAACTTCTTTGGTCGAGCAG                         GAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT
genomic: TACATACCCTCGTCAATGACATGTTTCCACCAACTTCTTTGGTCGAGCAGgtgacatatc ... aatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatatggacttcacaaccaacaaaattgacttctaatttctgaaatattgcagGAGGACTACAACTCATGGAATTATTGGAAAACGCCATTGCCAGATATTGATTAGTTTCATTGCTTAAGATACTTAGTTCCTTTTTGACAAGGATCCGTTG
                                ttctaat  putative branch site (score: 2)
                                   taatttctgaaatatt  TA-rich tract