Sequence
atgc intronic sequence ATGC exonic sequencegtaggttgctaattatatgacaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
Basic information
species | Glycine max |
transcript | GLYMA10G02040.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------gtaggttgcta--attatatgacaccgattgacgaattgctt-tctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
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gtacgttatctaatattttttaatctttcttcaagatgtacatgttcttatgataatttaacatgtctttatatatactttatatagTGGTCCAAGATGTATTCTTATGATATTTTAACATGTCTTTATATATACTTTATATAGTGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT
upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaggttgctaattatatgacaccgattgac--gaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
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--------------gtatggatctaatctatagggattatttttttct-ttctttaacatgcactatgtccttatgg-------tttaccatgtctttatatagTGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCT
upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 11
gtaggttgctaattatatg-acaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
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--------------gtatgtatgctagtt---ggatagccttacagtttc---tatcgttttgctttatttttgtggtcatcactctgcttttccttgctcagTGGTCCACGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAACGAGCCAGGCAGCAGTATTATGCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207780421|gb|GD750774.1|GD750774EST: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAG TAGGTCCACGCTGCGGTCTTGGTGAACTC
genomic: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgct ... cctattatagT-GGTCCACGCTGCGGTCTTGGTGAACTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
ctatcct CT-rich tract
taaaaaattatttata TA-rich tract