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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgctaattatatgacaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT

Basic information

species Glycine max
transcript GLYMA10G02040.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 10
---------------------------------------gtaggttgcta--attatatgacaccgattgacgaattgctt-tctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
                                         | |||  ||  || || | |||    || |   ||   || | || || || |  |   ||| ||   ||   ||    |   ||||||    | |  |||||||||||| | || ||||||||||||||   ||| ||||| || ||||||||||| ||||| ||||||
gtacgttatctaatattttttaatctttcttcaagatgtacatgttcttatgataatttaacatgtctttatatatactttatatagTGGTCCAAGATGTATTCTTATGATATTTTAACATGTCTTTATATATACTTTATATAGTGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCT

upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaggttgctaattatatgacaccgattgac--gaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
               ||||   |  ||  |   | |||  ||| |  | |||  ||| |     | | |  | || |       ||||   | || |  |||||||| ||| | || ||||||||||||||  | || |||||||| || |||||||| ||||||||||||
--------------gtatggatctaatctatagggattatttttttct-ttctttaacatgcactatgtccttatgg-------tttaccatgtctttatatagTGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCT

upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 11
gtaggttgctaattatatg-acaccgattgacgaattgctttctaatgttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
               |||| |  |   ||   | || || ||  | | |    ||     ||  ||   ||   ||||  ||  |     | ||||     ||||||||||| || || ||||||||||||||||||||||||||||| ||||| || ||||| ||||||
--------------gtatgtatgctagtt---ggatagccttacagtttc---tatcgttttgctttatttttgtggtcatcactctgcttttccttgctcagTGGTCCACGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAACGAGCCAGGCAGCAGTATTATGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207780421|gb|GD750774.1|GD750774
EST:     ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAG                         TAGGTCCACGCTGCGGTCTTGGTGAACTC
genomic: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgct ... cctattatagT-GGTCCACGCTGCGGTCTTGGTGAACTC
EST: gi|254343541|gb|GR857297.1|GR857297
EST:     TGCGGCTTCTTTGATGAAGATTGCT-ATGATATACGG-TGTTAGGAAG                         TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTT-CTGAAAACGAACCAGG
genomic: TGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGG
EST: gi|254343540|gb|GR857296.1|GR857296
EST:     ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAG                         TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGG
genomic: ATTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTGTTAGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGG
EST: gi|58014928|gb|CX701670.1|CX701670
EST:     TTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGG-TGTTTAGGAAG                         TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAG
genomic: TTGCGGCTTCTTTGATGAAGATTGCTAATGATATACGGTTG-TTAGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaataaaaaattatttatattcattggttttcttttatactatcctattatagTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT
                                         ctatcct  CT-rich tract
     taaaaaattatttata  TA-rich tract