Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattataatgttatttttgcatgtctatttacatgttatttcattatgatattcatatatatatgaaccttcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT

Basic information

species Glycine max
transcript GLYMA10G01280.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01280.2 (Glycine max), 3'ss of exon 10
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 9
gtattataatgttatttttgcatgtctatttacatgttatttcattatgatattcatatatatatgaaccttcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT
                       ||   |   ||   |  ||  ||  |    || | ||  ||  ||| |       ||| | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | 
-----------------------gtgcgtaggca-acttctttgttggggcggtcgtttacgtagtaacgt-----ggcagGTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208323313|gb|GE125650.1|GE125650
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|208280495|gb|GE075023.1|GE075023
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|151393723|gb|EV263598.1|EV263598
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|208161219|gb|GD961741.1|GD961741
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
EST: gi|193328222|gb|FK294243.1|FK294243
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGG
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGG
EST: gi|19944926|gb|AB082946.1|AB082946
EST:     ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG                         ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA
genomic: ATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAGgtattataat ... tcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttacatgttatttcattatgatattcatatatatatgaaccttcatcttcagATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT
                                          ccttcatcttc  CT-rich tract
       atgttatttcattatg  TA-rich tract