Sequence
atgc intronic sequence ATGC exonic sequence...aatttagtaaccatttctctctttgcatttcataatatgactatgctattgcttttccccccataattaacatctctgatttctactttttttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
Basic information
species | Glycine max |
transcript | GLYMA10G00610.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G00610.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 3'ss of exon 9
aatttagtaaccatttctctctttgcatttcataata---tgactatgctattgcttttccccccataattaacatctctgatttctactttttttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
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--ctcattgggtgatgggtaatttgcattttgtggctgcctcacttgttaaatgcgttactttcttgaagttccttcagt-atgattattttattatgtgcagGATAAATACATGCAGAACAGGTTGGTGAGACTAGTTTGTGTTTTCCTTCAGTCTCTCATCCGAAACAAGATCATAAACG
upper sequence: GLYMA10G00610.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G098815_T04 (Zea mays), 3'ss of exon 10
aatttagtaaccatttctctctttgcatttcataatatgactatgctattgcttt-tccccccataattaacatctctgatttctactttttttttct-cagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
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-acgccttgtgttttgtttatcggttattttgagacaccgc-gtgttaatgtgcagtatactgataaatgtttatttgaatgataattatttttttgtgcagGATAAATACATGCAAAACAGACTTGTGAGACTAGTTTGTGTTTTTCTGCAGAGTCTTATCCGAAACAAGATTATAAACG
upper sequence: GLYMA10G00610.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G011575_T01 (Zea mays), 3'ss of exon 10
---aatttagtaaccatttctctctttgcatttcataatatgactatgctattgcttttccccccataattaacatctctgatttctactttt-tttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
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actatttgaatgaaaactgaatattactaagcgtgttaaatg-ctactc-atggcactttgtttaagtgttgacaaacct--tcttaactaacattgtttgcagGACAAGTATATGCAAAATAGACTAGTGAGACTAGTATGTGTTTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG
upper sequence: GLYMA10G00610.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 3'ss of exon 10
aatttagtaaccatttctctctttgcatttcataatatgactatgctattgcttttccccccataattaacatctctgatttctactttttttttct---cagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
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--cttcctgttgtagtgggtggttatgtttc-tggtttgttcatatcagcaaacccagttagggtagaaacatctcaatcttcttcttcctttatctttccagGATAGGTACATGCAGAACAGACTTGTGAGACTTGTATGTGTATTCTTGCAGAGCCTAATTCGAAATAAAATTATTAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattgcttttccccccataattaacatctctgatttctactttttttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
catctctgatttctac CT-rich tract
atttctactttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatttagtaaccatttctctctttgcatttcataatatgactatgctattgcttttccccccataattaacatctctgatttctactttttttttctcagGATAAATACATGCAGAACCGGCTTGTGAGACTTGTCTGTGTTTTTCTGCAAAGCCTCATTCGGAACAACATTATTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG