1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttagcctcacaaattatccatgtagatattctttgcatagatattgagatttaaagaatagttaattttttcactttattgatttattataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGTTGTTGCTGTTGCTGGAGGATATGCATTTTACAAGTACAGAATCCAG
species | Glycine max |
transcript | GLYMA09G41070.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGEST: gi|6724792|gb|AW309191.1|AW309191
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGCGTGATTATCCTCGTTTTGGEST: gi|51341493|gb|CO982810.1|CO982810
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGEST: gi|254344698|gb|GR851288.1|GR851288
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGEST: gi|254344697|gb|GR851287.1|GR851287
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGEST: gi|10255066|gb|BE822832.1|BE822832
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGEST: gi|151407222|gb|EV277037.1|EV277037
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
EST: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTG GTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
genomic: CAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGgtgaggcttt ... ataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGG
ttgagatttaaagaatagttaattttttcactttattgatttattataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGTTGTTGCTGTTGCTGGAGGATATGCATTTTACAAGTACAGAATCCAG
tattgat putative branch site (score: 3)
aatagttaattttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagcctcacaaattatccatgtagatattctttgcatagatattgagatttaaagaatagttaattttttcactttattgatttattataaatgcagGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGTTGTTGCTGTTGCTGGAGGATATGCATTTTACAAGTACAGAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - cctcaca
- - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - ctttgca