1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tctaacaaggaggaaacattttccattaatacatcatttctgttaaaaacatgggtatctagtttttgaaaaataatgtttaacttgctgaaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACTATACTTGTCTTGTTTGAGGCTTTGCGTGATGTGGCATTACATGCTCACA
species | Glycine max |
transcript | GLYMA09G40480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTTTCTGATGCAAAGTGCCGAGCTGCTGTTCAACTTTTATTGATCCAG GCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACTEST: gi|13789899|gb|BG652490.1|BG652490
genomic: ATTTTTCTGATGCAAAGTGCCGAGCTGCTGTTCAACTTTTATTGATCCAGgtagatttat ... aaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACT
EST: CTTTTATTGATCCAG GCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACTEST: gi|13480155|gb|BG509498.1|BG509498
genomic: CTTTTATTGATCCAGgtagatttat ... aaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACT
EST: ATTTTTCTGATGCAAAGTGCCGAGCTGCTGTTCAACTTTTATTGATCCAG GCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACT
genomic: ATTTTTCTGATGCAAAGTGCCGAGCTGCTGTTCAACTTTTATTGATCCAGgtagatttat ... aaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACT
aaaacatgggtatctagtttttgaaaaataatgtttaacttgctgaaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACTATACTTGTCTTGTTTGAGGCTTTGCGTGATGTGGCATTACATGCTCACA
gtttaac putative branch site (score: 3)
tatctagtttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaacaaggaggaaacattttccattaatacatcatttctgttaaaaacatgggtatctagtttttgaaaaataatgtttaacttgctgaaattggcagGCGGTGTTGGAGATCTATAACATGTACCGAACTCAACTTTCAGCAAAAACTATACTTGTCTTGTTTGAGGCTTTGCGTGATGTGGCATTACATGCTCACA
- - - - ggaggaa
- - - - - - - - - - - ccattaa
- - - - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg