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gttagcaattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGCTTCAGTATTCACCGAATCTACGATGCACTGCT
species | Glycine max |
transcript | GLYMA09G40150.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGEST: gi|15337648|gb|BI498304.1|BI498304
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
EST: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGEST: gi|209727344|gb|BW655275.1|BW655275
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
EST: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAG GTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
genomic: ATTACACCGAATTTAAGTTTCCTCAGATAAAAGCACACCCATGGCATAAGgttagcaatt ... tttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATG
aatttgtaattgataaatagttccagtcagagatctgattgattatttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGCTTCAGTATTCACCGAATCTACGATGCACTGCT
gattgat putative branch site (score: 4)
tgattgattatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaattctttactccccatttgttcccggagtatattcaatttgtaattgataaatagttccagtcagagatctgattgattatttatatcagGTTTTTCACAAGAAGATGCCTTCAGAAGCAGTGGATCTAGTGTCAAGGATGCTTCAGTATTCACCGAATCTACGATGCACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG