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...aaatgactttactgtagtaaaataaattgtttaaccaatgaaacttggtataagagatcattgtatgcatgttatttgagcatcatgatgtgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCT
species | Glycine max |
transcript | GLYMA09G37720.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGEST: gi|26058330|gb|CA801244.1|CA801244
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGEST: gi|26058746|gb|CA801660.1|CA801660
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGEST: gi|7685215|gb|AW755863.1|AW755863
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGEST: gi|18040948|gb|BM309242.1|BM309242
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGEST: gi|6719933|gb|AW307580.1|AW307580
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTNTAGTAGTCACTTCATCTGANAGTATTTCTAAGAGEST: gi|208117756|gb|GD914638.1|GD914638
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
EST: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAG AATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
genomic: ATGGCACGATTCATGTCTGCGTTGGCATTGGCATACATGTTTGACGGGAGgtaattaatt ... tgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAG
tggtataagagatcattgtatgcatgttatttgagcatcatgatgtgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCT
atgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgactttactgtagtaaaataaattgtttaaccaatgaaacttggtataagagatcattgtatgcatgttatttgagcatcatgatgtgttttgcagAATGGATGAATATGCTTTAGTAGTCACTTCATCTGAAAGTATTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - ccaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatg