Sequence
atgc intronic sequence ATGC exonic sequence...tgaatgtttttgcaactgacatccccagtggacgtgcatattgtatttgctttaccttcattgaagctgataacatttaatgctagatattttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
Basic information
species | Glycine max |
transcript | GLYMA09G34860.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G34860.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os11g48090.4 (Oryza sativa), 3'ss of exon 11
-tgaat-gtttttgca-actgac-atccccagtggacgtgcatattgtatttgctttaccttcattgaagctgataacatttaatgctagatattttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
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ataagtagcagttacagactggtgatatcgaacaaattggactattatgtttgcaattacatatctaaga--aataa-attaaatctcattttgtttc-tgtagTCAGGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAG
upper sequence: GLYMA09G34860.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 3'ss of exon 10
tgaatgtttttgcaactg--acatccccagtggacgt-gcatattgtatttgctttaccttcattgaagctgataacatttaatgctagata---ttttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
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------ttcttaaaatcattatatttctaaaaaccaccatccttcgcgttttattaatcaccattcttactatcttctctaactgatacatggggcattgctgtagTCAGGTTTGTCATCCACCACAGTTTGAGCAAATCAATGGAGACTTACTACCAG
upper sequence: GLYMA09G34860.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv02s0087g00070.t01 (Vitis vinifera), 3'ss of exon 10
tgaatgtttttgcaactgacat--ccccagtggacgtgcatattgtatttgctttaccttcattgaagctgataacatttaatgctagatattttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
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tgtgtgaacttgcatatgttattactctatgtggtgtg-atattcagtcatgcttgcctgtcatgta-tttattataattaataaatagtggttgcttgtagTCAGGTTTGTCATCCATCACAGCCTAAGTAAATCAATGGAGACATACTACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgctttaccttcattgaagctgataacatttaatgctagatattttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
tattttc CT-rich tract
tgataacatttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaatgtttttgcaactgacatccccagtggacgtgcatattgtatttgctttaccttcattgaagctgataacatttaatgctagatattttcatgtagTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAG
tgaatgt
- - - - - -gcaactg
- - - - - - - - - -catcccc
- - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaatgc