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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgataccaattgaatattaaggaaatgtatggaatgtaatgcatattcaccaagtgataatgtcctgttttttttttttttttccatgtgtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGCTCAAAATTTGCACAG

Basic information

species Glycine max
transcript GLYMA09G33480.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208213023|gb|GE009184.1|GE009184
EST:     CTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: CTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208181657|gb|GD978508.1|GD978508
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207838361|gb|GD811115.1|GD811115
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|193351009|gb|FK315773.1|FK315773
EST:     TTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: TTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207781497|gb|GD754020.1|GD754020
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208024218|gb|GD824240.1|GD824240
EST:     TTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: TTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208337743|gb|GE135181.1|GE135181
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208213209|gb|GE010574.1|GE010574
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAG
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAG
EST: gi|208242536|gb|GE037894.1|GE037894
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208307263|gb|GE101985.1|GE101985
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207682760|gb|GD666377.1|GD666377
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208135490|gb|GD934515.1|GD934515
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208238064|gb|GE036660.1|GE036660
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208243471|gb|GE042021.1|GE042021
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTG
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTG
EST: gi|193343919|gb|FK313219.1|FK313219
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207847349|gb|GD820390.1|GD820390
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|22931030|gb|BU548169.1|BU548169
EST:     ACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGNNNCTCNGTAATTGC
genomic: ACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|16346437|gb|BI972032.1|BI972032
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|193455234|gb|FK419239.1|FK419239
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208322012|gb|GE125973.1|GE125973
EST:     ATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: ATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207775539|gb|GD746886.1|GD746886
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208135227|gb|GD937878.1|GD937878
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAG
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAG
EST: gi|193562546|gb|FK519077.1|FK519077
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|207705137|gb|GD687730.1|GD687730
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208235434|gb|GE029676.1|GE029676
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|16348582|gb|BI974177.1|BI974177
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208218304|gb|GE020032.1|GE020032
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
EST: gi|208044112|gb|GD842426.1|GD842426
EST:     GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAG                         GCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC
genomic: GTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGAAGCAGgtacatatga ... gtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaccaagtgataatgtcctgttttttttttttttttccatgtgtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGCTCAAAATTTGCACAG
                  tcctgttttttttttt  CT-rich tract
            ataatgtcctgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgataccaattgaatattaaggaaatgtatggaatgtaatgcatattcaccaagtgataatgtcctgttttttttttttttttccatgtgtggaatcagGCTACAACTCCAAACTATAGAGCATACCAAGAGCAGGTTCTCCGTAATTGCTCAAAATTTGCACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-tgatacc
- - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - gaatgta
- - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - -tcaccaa