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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctgcactctttaccccaagcgcatcttaatatgtaaatataagttttattcatgctctttccttttggtggtttcagGAATTCAAAACTGACACATTTACTTCAAGACTCACTAG

Basic information

species Glycine max
transcript GLYMA09G33340.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440383|gb|BE440889.1|BE440889
EST:     GGAGATGTAATATCCGCTCTAGCAGCGAAAAGCAGTCACATACCATATCG                         GAATTCAAAACTGACACATTTACTTCAAGACTCACTAG
genomic: GGAGATGTAATATCCGCTCTAGCAGCGAAAAGCAGTCACATACCATATCGgtatatctgc ... gtggtttcagGAATTCAAAACTGACACATTTACTTCAAGACTCACTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttaatatgtaaatataagttttattcatgctctttccttttggtggtttcagGAATTCAAAACTGACACATTTACTTCAAGACTCACTAG
 tcttaat  putative branch site (score: 3)
                                ctctttccttttggt  putative PPT
     aatatgtaaatataag  TA-rich tract