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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagttaatattttcctcttttagttataattttacttatggaaacattcataaaattcttttgtgtcgttggggctttggcgagaagaccatcacctttccattttgaaagccacatttctgcattacttgctttattgttaaaaatgattaatttatattcctattttcagAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACCCAATCATCAATGGCATTGGAAATACCAGTTCTGAGATAGTGCTACAGCA

Basic information

species Glycine max
transcript GLYMA09G32420.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333989|gb|GR848907.1|GR848907
EST:     TAAGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAACG                         AAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACC
genomic: TAAGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAACGgcaagttaat ... ctattttcagAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACC
EST: gi|16104739|gb|BI892479.1|BI892479
EST:     TAAGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAACG                         AAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACC
genomic: TAAGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAACGgcaagttaat ... ctattttcagAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACC
EST: gi|193353048|gb|FK313902.1|FK313902
EST:     TAAGTTTAGAGA-TTTCTCAATAGGGTTATCACCATGGGAGAAATAAACG                         AAACAAAGTGTTCTTCGTTGGCCGGAAATGAATTAGAGAGTCAAAAGGACC
genomic: TAAGTTTAGAGATTTTCTCAATAGGGTTATCACCATGGGAGAAATAAACGgcaagttaat ... ctattttcagAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgcattacttgctttattgttaaaaatgattaatttatattcctattttcagAAACAAAGTGTTCTTCGTTGGCCAGAAATGAATTAGAGAGTCAAAAGGACCCAATCATCAATGGCATTGGAAATACCAGTTCTGAGATAGTGCTACAGCA
                              gattaat  putative branch site (score: 3)
                                          ttcctattttc  putative PPT
               tttattgttaaaaatg  TA-rich tract