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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgaataatgtcttcgattgttaactttttatttgcttcatcatactcaagggaaaaattatagacaagttcatgatacttaatataaaacaattatgttctgtctgtggcatgtgtttgatagtttgatgattatgtttgcagGTTGTTCAGCAGTTTGGAATACCTCATCTATTTGATCTCCCTATTAGACCAACT

Basic information

species Glycine max
transcript GLYMA09G31980.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G31980.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 3'ss of exon 10
gcatgaataatgtcttcgattgttaactttttatttgcttcatcatactcaagggaaaaattatagacaagttcatgatacttaatataaaacaattatgttctgtctgtggcatgtgtt-tgatagtttgatgattatgtttgcagGTTGTTCAGCAGTTTGGAATACCTCATCTATTTGATCTCCCTATTAGACCAACT
                                                                |   ||  |  |||| |  | | ||  ||| |    |  ||  | |    ||  ||  |  ||  |    ||||| |   |||||||| |||||||||||||||||||| || || ||| | || ||  | ||||||
--------------------------------------------------------------gcaagaaaagttttgatgcacatt-tagcacattc---tcttgaatattttttgaattgcgtcagcattgcaattattt---cagGTTGTGCAGCAGTTTGGAATACCTCACCTCTTCGATTTGCCGATACGGCCAACT

upper sequence: GLYMA09G31980.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G129208_T01 (Zea mays), 3'ss of exon 9
gcatgaataatgtcttcgattgttaactttttatttgcttcatcatactcaagggaaaaattatagacaagttcatgatacttaatataaaacaattatgttctgtctgtggcatgtgtttgatagtttgatgattatgtttgcagGTTGTTCAGCAGTTTGGAATACCTCATCTATTTGATCTCCCTATTAGACCAACT
                                                    |  | | || |         | ||    | ||  |||   |  || |||  |  |||| | ||   ||| |   |   ||  |  ||||| |||||||| |||||||||||||||||||| || |||||| | || ||  | ||||||
----------------------------------------------------gcaagacatcaatatttcaattatttctcataccatagttctcttgtgtagtagctgttgaattgcttttaagatgcaat--tcctgttt-cagGTTGTGCAGCAGTTTGGAATACCTCACCTCTTTGATTTGCCAATACGGCCAACT

upper sequence: GLYMA09G31980.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 3'ss of exon 9
gcatgaataatgtcttcgattgttaactttttatttgcttcatcatactcaagggaaaaattatagacaagttcatgatacttaatataa-aacaattatgttctgtctgtggcatgtgtttgatagtttgatgattatgtttgcagGTTGTTCAGCAGTTTGGAATACCTCATCTATTTGATCTCCCTATTAGACCAACT
                                                | |    |||||| | | | ||     ||||       || | ||     ||| |||||  ||   || | | | | |  |||||   ||| ||  |||||||| |||||||| ||||| || ||||| |||||||| || ||||||||||| 
----------------------------------------------tttgagattaaaaatgaaataaaaaactttgatttagggcattataatttccatggtctgtaggta-tatttttctaacacattgatccatatcttaacagGTTGTCCAGCAGTTCGGAATTCCCCATCTGTTTGATCTTCCCATTAGACCAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaattatgttctgtctgtggcatgtgtttgatagtttgatgattatgtttgcagGTTGTTCAGCAGTTTGGAATACCTCATCTATTTGATCTCCCTATTAGACCAACT
                                  gtttgat  putative branch site (score: 5)
                                          attatgttt  TA-rich tract