1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttttttttttttgatgatccattaggaccatggattccatggaattgtatgctctcaaattatttactatttatctatacaagtattgtatcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTACAATCAATTTCTCTACTAGCTCCTGTTCTGGGCTCAGAGATTTCTTCTT
species | Glycine max |
transcript | GLYMA09G31760.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAG GTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTAEST: gi|207816917|gb|GD788458.1|GD788458
genomic: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAGgtttttatag ... tcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
EST: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAG GTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTAEST: gi|23731586|gb|BU763924.1|BU763924
genomic: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAGgtttttatag ... tcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
EST: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAG GTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTAEST: gi|208231514|gb|GE028551.1|GE028551
genomic: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAGgtttttatag ... tcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
EST: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAG GTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTAEST: gi|33389673|gb|CA852880.1|CA852880
genomic: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAGgtttttatag ... tcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
EST: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAG GTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
genomic: TGGCAGAAGAATTTGGACCGGATTGGGCAATGCAGCACATTATTCCCCAGgtttttatag ... tcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTA
tgtatgctctcaaattatttactatttatctatacaagtattgtatcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTACAATCAATTTCTCTACTAGCTCCTGTTCTGGGCTCAGAGATTTCTTCTT
tatccttt CT-rich tract
aaattatttactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttttttttgatgatccattaggaccatggattccatggaattgtatgctctcaaattatttactatttatctatacaagtattgtatcctttgcagGTTTTGGACATGGTTACTGATCCACATTATCTGTATCGAATGACAATCTTACAATCAATTTCTCTACTAGCTCCTGTTCTGGGCTCAGAGATTTCTTCTT
- - - - - -tgatgat
- - - - - - - - - - - - - -ccatgga