1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caatggcgtatgcatctcaaaaaatgagaatcactttgcatgtatctgcttgaaagcatggacagattgattatctaacctagttttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATACATGGAATTCTGTGACGATTCTGAGGCAACTTTCAGAAGAGCCTTGAAT
species | Glycine max |
transcript | GLYMA09G23150.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGTCCTTCGGGCACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATAEST: gi|193487302|gb|FK450939.1|FK450939
genomic: CGTCCTTCGGGCACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATA
EST: CGGGCACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATAEST: gi|193527829|gb|FK488035.1|FK488035
genomic: CGGGCACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATA
EST: CTTCTGAGCCATTATCGTCCTTCGGGCACCATATTTGCTTTTACAGATGA GAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATA
genomic: CTTCTGAGCCATTATCGTCCTTCGGGCACCATATTTGCTTTTACAGATGAgtgagttctt ... ggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATA
ctgcttgaaagcatggacagattgattatctaacctagttttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATACATGGAATTCTGTGACGATTCTGAGGCAACTTTCAGAAGAGCCTTGAAT
atctaac putative branch site (score: 2)
attgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatggcgtatgcatctcaaaaaatgagaatcactttgcatgtatctgcttgaaagcatggacagattgattatctaacctagttttgctggtcatgcagGAAGAGGGTACAACAGAGGCTGGCTTTGTATCAAGGAGTCTGTCCAATATACATGGAATTCTGTGACGATTCTGAGGCAACTTTCAGAAGAGCCTTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -gtatgca
- - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgga