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gtgagcatggtgttatatcattttgataaacataatatctgtatcttgttcacaattttatgaagagatatgacttgtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACAT
species | Glycine max |
transcript | GLYMA09G15980.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTEST: gi|58014993|gb|CX701735.1|CX701735
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTEST: gi|57574329|gb|CX547304.1|CX547304
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTEST: gi|254322136|gb|GR837550.1|GR837550
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
EST: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAG CGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
genomic: AAATGTCACTAGAGATTTTATTGGCACTCTAGATTACATATTTTACACAGgtgagcatgg ... gtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTT
ataatatctgtatcttgttcacaattttatgaagagatatgacttgtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACAT
aattttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatggtgttatatcattttgataaacataatatctgtatcttgttcacaattttatgaagagatatgacttgtggtttcagCGGATTCATTGGTTGTGGAGTCATTATTGGAGTTGCTGGATGAGGAGAGTTTGAGGAAGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA