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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacgttggaataatgttgtatttatatttaatatagtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAGTACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA

Basic information

species Glycine max
transcript GLYMA09G09710.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G09710.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
gttacgttggaataatgttgtattt-atatttaatatagtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAGTACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
|||| |||  |  ||  ||| |||| |||| ||  || |  | | ||||| | | || |  |     |  |||||   |||||| ||||||||     || |||||||||||||| || |||||||||| |||||||||  || | ||| |||||||  ||||| |||| ||||| ||||| |
gttatgtttcaggaaatttggatttcatatcta-cattg-atttactatttggattt-taaaccacttgctattt-catgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaatatagtgtcttctattagaaattatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTTCTCCATAGGAATTACAGAGGTTCTTAGTACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
 atttaat  putative branch site (score: 4)
                                       ttttattt  putative PPT
     atatagtgtcttctat  TA-rich tract