1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aattcaaatgttgaatttttttacttggtcattgaatttccaaattgatcccatgacattgagtgttggaactaagcattttgtcttcttgataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACA
species | Glycine max |
transcript | GLYMA09G08830.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAG AAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTEST: gi|13481462|gb|BG510805.1|BG510805
genomic: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGgtatgtcagc ... gataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCT
EST: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAG AAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTEST: gi|193518185|gb|FK474104.1|FK474104
genomic: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGgtatgtcagc ... gataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCT
EST: ACTATTATTAAGAAGGTGGCCCGCAAG AAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTEST: gi|7146713|gb|AW508635.1|AW508635
genomic: ACTATTATTAAGAAGGTGGCCCGCAAGgtatgtcagc ... gataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCT
EST: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAG AAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCT
genomic: TGCAGTTGCCACATATAAGTGAGACTATTATTAAGAAGGTGGCCCGCAAGgtatgtcagc ... gataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCT
tgatcccatgacattgagtgttggaactaagcattttgtcttcttgataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACA
tcttgat putative branch site (score: 4)
tcttcttg CT-rich tract
ttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcaaatgttgaatttttttacttggtcattgaatttccaaattgatcccatgacattgagtgttggaactaagcattttgtcttcttgataatgcagAAAGTGAGAACATTTCAGGAACTTCATGACATGGACTCTCAGGAGCGAGCTGACCTTCTTATTCAAACAGGTGGGTTATCTTCCGCTGAAGTGGAAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA