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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcatatattctatatcttctttcatcggactatttcttttggagtttagtttatgatcaaacttcatgattttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG

Basic information

species Glycine max
transcript GLYMA09G08150.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08150.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 11
-------gtagcatatatt-ctatatcttctttcatcggactatttcttttggagtttag-tttatgatcaaacttcatgattttctactt-----agACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG
       ||     || |  || |     || |    || |||||||| ||   | | |   ||||  |   |  |   ||   ||  |||     ||||| | ||||||||| |||   ||||||| |||||||| |||||||| |||||||||||||| || |  | ||||| |  ||| ||||||||||| ||
gtagtctgttaatgatgtcactctcctccctcttggtggtctatttctcttcctgatcaaacttatcttttcatgtttggaaactcctctttgtgcagACTTTTGAAGAAGCAGTTGAAATGAACAACTCTGTACCACAAGGATTGAGTAGTTCAATCTTCACTCGCAAACCTGAAGTTATCTTCAAATGGATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207768693|gb|GD740504.1|GD740504
EST:     GTATGTTATGAAATTTCAG                         ACTCTGGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGAT
genomic: GTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGAT
EST: gi|58019812|gb|CX706554.1|CX706554
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTAGGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|57575444|gb|CX548419.1|CX548419
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|254336948|gb|GR843127.1|GR843127
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|208261117|gb|GE060363.1|GE060363
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTCGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|58022816|gb|CX709557.1|CX709557
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|208163845|gb|GD961511.1|GD961511
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|254336949|gb|GR843128.1|GR843128
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
EST: gi|19452651|gb|BM954061.1|BM954061
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAA
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAA
EST: gi|58022682|gb|CX709423.1|CX709423
EST:     TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAG                         ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT
genomic: TAGTTAAAGAAGAATTGTTTGGTCCAGTTCTGTATGTTATGAAATTTCAGgtagcatata ... ttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggactatttcttttggagtttagtttatgatcaaacttcatgattttctacttagACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG
                                           ttttctactt  CT-rich tract
                  tttagtttat  TA-rich tract