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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggattttgctgatatagtttcattattatataattaaatgaatgtgatcctttctggcaaataattccgaatattttcaaatttcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG

Basic information

species Glycine max
transcript GLYMA09G04910.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254313963|gb|GR831592.1|GR831592
EST:     ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGG                         GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGAT
genomic: ATCCCACAATTGACGTTTTACTAACCGGAGGACGTGATTCTGTCTGCCGGgtatggattt ... caattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattaaggaatagaaatgtaaaattcatactttggtgatgctcaattttcagGTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG
                                                ttttc  CT-rich tract
           aatagaaatgtaaaat  TA-rich tract