1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgagcatcttattatttcccgtttctttccttattgtctgccatgattagactgcaataagtcactgtttttttgtggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTGTACAATGAGCTTAATCTTCAGGTTTGAACTTCATTTGTATCTAGCTCTA
species | Glycine max |
transcript | GLYMA09G01820.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAA TAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTGEST: gi|7028813|gb|AW458596.1|AW458596
genomic: TTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagc ... tggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTG
EST: TTGTGAAAGCCTGGGAACTTAGTAATGAACAACATAAGAGAGTGCTACAA GAGAACTATGGTGAGCCAGATCCAGAAAATGGTGCTAAAGTAAAGGCCCTGEST: gi|7284732|gb|AW597282.1|AW597282
genomic: TTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagc ... tggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTG
EST: TTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAA GAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTG
genomic: TTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagc ... tggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTG
ttattgtctgccatgattagactgcaataagtcactgtttttttgtggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTGTACAATGAGCTTAATCTTCAGGTTTGAACTTCATTTGTATCTAGCTCTA
tttttttgt CT-rich tract
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagcatcttattatttcccgtttctttccttattgtctgccatgattagactgcaataagtcactgtttttttgtggtttgcagGAGAACTATGGTAAGCCAGATCCAGAAAATGTTGCTAAAGTAAAGGCCCTGTACAATGAGCTTAATCTTCAGGTTTGAACTTCATTTGTATCTAGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT