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gtactataacaattttatagcacacatttggaagtgactgctcttaatcaggcgtttattgatgatttattgtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACA
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|254315383|gb|GR825192.1|GR825192
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|120532773|gb|EH260906.1|EH260906
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|254314657|gb|GR829650.1|GR829650
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|15662122|gb|BI699493.1|BI699493
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: TAAGAGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|120533916|gb|EH262049.1|EH262049
genomic: TAAGAGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|254314384|gb|GR831969.1|GR831969
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|21887763|gb|BQ740976.1|BQ740976
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|42722916|gb|CK768815.1|CK768815
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTEST: gi|9899741|gb|BE608709.1|BE608709
genomic: GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
EST: AGATTGAAGCATTTCATGTTTTCAAG CTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
genomic: AGATTGAAGCATTTCATGTTTTCAAGgtactataac ... gtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTT
tttggaagtgactgctcttaatcaggcgtttattgatgatttattgtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACA
tattgat putative branch site (score: 3)
tttattgatgatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactataacaattttatagcacacatttggaagtgactgctcttaatcaggcgtttattgatgatttattgtcataacagCTATTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA