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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaatatcaacataggttacctggtttgtcatatttattatcttttttgctacttacatgcctaattgtgatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGG

Basic information

species Glycine max
transcript GLYMA09G01160.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 10
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 3'ss of exon 12
gtaagagaatatcaacataggttacctggtttgtcatatttattatcttttttgctacttacatgcctaattgtgatat-tgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGG
    |  | | ||    | |      |  ||||| || || || | |||  ||  |||| |  ||   |   |   | | |  |||| |||||||| |||||||||||||||||||| || |||||||| || || || || || ||   |||||| ||||||||
----gtaagtttcgttttcgtcccattcatttgttatgttcataagcttcatttttactcat-tgttgagccgctttttctaaagCTAATGAGAGTGTATGGAGCATTGATGTGGTCGCTTGGTAAAGTCCTGAACACACCAGAGGTCGTACGTGTCTATATTGG

upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 13
---------------------------gtaagagaatatcaacataggttacctggtttgtca-tatttattatcttttttgctacttacatgcctaattgtgatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGG
                            |         ||  ||||  ||||||  | |  ||  | ||  |     |||    ||||   ||| |  |||| ||| | ||||| ||||| || ||||| ||||||||||||||||| || |||||| | ||||||||||| |||   || || ||||||||
gtaggatttacaactgttatcctcttatttttcattcctcttcatat-ttaccttttctcccagcaattgatcctcatttcttgacttgattgcatc-ttgttatactatagCTAATGAGGGTCTATGGTGCATTGATGTGGTCACTTGGGAAAGTTTTGAATACTCCCGAGGTTGTGCGAGTTTATATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcatatttattatcttttttgctacttacatgcctaattgtgatattgtagCTTATGAGAGTTTATGGAGCATTGATGTGGTCACTGGGTAAAGTTCTAAATACTCCCGAAGTTACACGTGTATATATTGG
      atatttattatctttt  TA-rich tract