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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatagaagtctttcatcctttgagggtcactaaccttgtacataaaataatgacttttgatgtggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGTTAACTGACTTGGATTTGGCTGAACTTGACATTAAGA

Basic information

species Glycine max
transcript GLYMA08G46090.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259263|gb|BE347471.1|BE347471
EST:     GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: gi|209724188|gb|BW659722.1|BW659722
EST:     GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: gi|193331359|gb|FK296739.1|FK296739
EST:     GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCC
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCC
EST: gi|193386205|gb|FK351665.1|FK351665
EST:     GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
EST: gi|193429516|gb|FK394464.1|FK394464
EST:     GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAA
genomic: GCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAA
EST: gi|193566710|gb|FK526015.1|FK526015
EST:     TTGAAGTTAAAAGACTACAAGGTAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTAACAAATGTTAAAGCCCTCTATAGAAGGGCCCA
genomic: TTGAAGTTAAAAGACTACAAGG-AAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGT-ACAAATGTTAAAGCCCTCTATAGAAGGGCCCA
EST: gi|58019857|gb|CX706599.1|CX706599
EST:     AGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAG                         GTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA
genomic: AGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGgtattataga ... ggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagggtcactaaccttgtacataaaataatgacttttgatgtggattggtagGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGTTAACTGACTTGGATTTGGCTGAACTTGACATTAAGA
                       ataaaataatgacttt  TA-rich tract