1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagttttctttctctttttttcaaactactatattacacgaatagatatgtttatttttgtcaccttcattttcctttctccccttcccctttgaatatttgaaattatatcccaagttttctgccttttcagGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCAG
species | Glycine max |
transcript | GLYMA08G45990.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAGA GTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATAEST: gi|208229731|gb|GE026516.1|GE026516
genomic: ATGGTGGTGGTATGAGTTCTGCAAAAGCTGCTTTAGAAAGTGATACAAGAgtgagttttc ... gccttttcagGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATA
EST: CAAAAGCTGCTTTAGAAAGTGATACAAGA GTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATA
genomic: CAAAAGCTGCTTTAGAAAGTGATACAAGAgtgagttttc ... gccttttcagGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATA
ctccccttcccctttgaatatttgaaattatatcccaagttttctgccttttcagGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCAG
ttttctgccttttc CT-rich tract
tttgaatatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttctttctctttttttcaaactactatattacacgaatagatatgtttatttttgtcaccttcattttcctttctccccttcccctttgaatatttgaaattatatcccaagttttctgccttttcagGTGCTTGCTTTTGAAGCTGGTAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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