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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatctgaaggggttggtgtttcaatttagtttctttatatatgattttattgttcgcataatgctgatcaatttataaccctgtgcagGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCT

Basic information

species Glycine max
transcript GLYMA08G34790.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G34790.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 10
---gtaagtaatctgaaggggttggtgtttcaatttagtttctttatatatgattttattgttcgcataatgctgatcaatt------tataacc-ctgtgcagGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCT
     |||  ||||         | ||||  | |  |||||  |  | ||  | ||   | ||    |||  ||||  ||||      | |||   |  | ||| ||  | ||||||||| ||||||| ||||| || |||||| |||||||| ||||  | |||||||||||||| ||
gtaagaagatatctagtataacagttgttcta-tccagttttatcttttacaactt-ggtatttttgtaaaactgacaaattgtattctgtaataacctttcagCGACTTAAGTAACAACACTTTTGACCCATCAGAAGCTCCAGCTTGGTTCTCAACCTTACCATCACTCACCACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208132723|gb|GD931216.1|GD931216
EST:     TTCATAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGT                         GGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCAC
genomic: TTCATAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTgtaagtaatc ... ccctgtgcagGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCAC
EST: gi|208272069|gb|GE070993.1|GE070993
EST:     TTCATAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGT                         GGATCTTAGTAACAACTCTTTTGTATCCATCTGATGCTCCAACTTGGTTCA
genomic: TTCATAGGTCCTTTGCCTGACTTAACTGGAATGGATACCCTCAACTATGTgtaagtaatc ... ccctgtgcagGGATCTTAGTAACAACTCTTTTG-ATCCATCTGATGCTCCAACTTGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatatatgattttattgttcgcataatgctgatcaatttataaccctgtgcagGGATCTTAGTAACAACTCTTTTGATCCATCTGATGCTCCAACTTGGTTCACAACTCTTCCATCACTCACCACTCT
                                       ttataac  putative branch site (score: 2)
     atatgattttattgtt  TA-rich tract