1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatttacctttagaaccataatgtttataaccaattataagacacggattatcctcttaataaactaattcttctgttattattgggtagttgtaattctttttccagaatattctctaatacttacattcacttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGC
species | Glycine max |
transcript | GLYMA08G26180.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|4395878|gb|AI494875.1|AI494875
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|6228175|gb|AW156774.1|AW156774
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|51335928|gb|CO979794.1|CO979794
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|208196726|gb|GD998353.1|GD998353
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|213606379|gb|DB976512.1|DB976512
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|24205208|gb|BU964461.1|BU964461
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|31464623|gb|CD406891.1|CD406891
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCGAATTTGAAGTGCAG CTTTACTAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|58015608|gb|CX702350.1|CX702350
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: CTACTTCAAATGTGGTCAAATTGGAAGTGCAG CTTTACAAAGCCCGGG-AGAAAAAGTATCTGCTTGATCTTCAAAGGGTGCAEST: gi|209726301|gb|BW659614.1|BW659614
genomic: CTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAG-AAAAGTATCTGCTTGATCTTCAAAGGGTGCA
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|193409431|gb|FK370453.1|FK370453
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: GAGAATGATGCTGTTTCTACTTCAAATGTTTGGTCAAATTTGAAGCGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|6846579|gb|AW348869.1|AW348869
genomic: GAGAATGATGCTGTTTCTACTTCAAATG--TGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGEST: gi|6951821|gb|AW423889.1|AW423889
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
EST: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAG CTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAC
genomic: TTGAGAATGATGCTGTTTCTACTTCAAATGTGGTCAAATTTGAAGTGCAGgtaatttacc ... acttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAG
gtagttgtaattctttttccagaatattctctaatacttacattcacttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGC
tacttac putative branch site (score: 1)
ttcacttc CT-rich tract
aatattctctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttacctttagaaccataatgtttataaccaattataagacacggattatcctcttaataaactaattcttctgttattattgggtagttgtaattctttttccagaatattctctaatacttacattcacttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT