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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgactctaccatatgtgttcttatgtgacaaacaccatatgtacctagttcttcacttatcctttttgctggaaagtgtcttcattaaaccattgatgataatttcttatatggaccacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCA

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtgactctaccatatgtgttcttatgtgacaaacaccatatgtacctagttcttcacttatcctttttgc-tggaaagtgtcttcattaaaccattgatgataatttcttatatggaccacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCA
                                  |||  ||||   | |    |  ||  |||    || |||| |      |  | | |||| |  ||  ||    | || || |  ||    | ||||||| ||  |||| |||||||| ||||| |||||||||||||| || ||||| || ||||| ||||| || ||||| ||||||||||| || ||||| || |
--------------------------------gtaaat-ccatgaatcctatatcttttgcttcaatttcttgcataacttctcacattattagaggatctatatatacttattct--ggttgtctcacagAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTA

upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 10
-------------------------------------------gtatgtgactctaccatatgtgttctta------tgtgacaaacaccatatgtacctag--ttcttcac----ttatcctttttgctggaaagtgtcttcattaaaccattgatgataatttcttatatgg-accacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCA
                                            |   | | |||  ||| |   |||| |      ||||  |||  |||| |  |   ||  |||||       || | | ||||  |   ||      |    | |   || |||||| ||  | || ||  | ||    |||||||| || ||||||||||| ||||| || ||||| |||||||| || || || ||||| |||||||| || || ||||||||||||||||||||||| |
gtatgtctctgtagttgtagcaacatgggcatttattgttatcatccttcaatctctcatttagcttctaaccagattgtgctaaaatccatttcaaatcaggattcttggtatggttttgccttttcttctgaacccaactgtccagatttttcatgata-ttgttaatttgttatcatttgcagAATGTATTAGGCAAATGGAGCTCAAAGCTTTTTGCTATTGCTTTGCTAGCATCTGGTCAGAGTTCTACGATCACGGGAACATATGCAGGGCAATATGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317210|gb|GR826155.1|GR826155
EST:     AGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGA                         AATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCC
genomic: AGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAgtatgtgact ... ccacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCC
EST: gi|22523022|gb|BU081833.1|BU081833
EST:     AACAAGGCCTCCTTTTTATTAAGA                         AATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCC
genomic: AACAAGGCCTCCTTTTTATTAAGAgtatgtgact ... ccacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaagtgtcttcattaaaccattgatgataatttcttatatggaccacacacagAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCA
                    cattgat  putative branch site (score: 4)
                     attgatgataatttct  TA-rich tract