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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatattctactaaagggttgtgactttgttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTCGTGAATTCATCCCCT

Basic information

species Glycine max
transcript GLYMA08G21620.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21620.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 10
--gttaatatattctactaaagggttgtgactttgttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTCGTGAATTCATCCCCT
  | |   || ||     |   | | ||| |||    || |||  |||        || ||| ||| | || |  ||| |    ||| || ||||| |||||||| |||||||||||||||||||| || ||| |||  || || ||||||||  | ||||| ||||| || || ||||| ||||| |||
gtggttgcatttttagtcatttgatggtggcttg---cacatttcttgt-------ttcagattctaatatatgatttct----tgc-agAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaattctttgcaaataaatttagaatctcacatctattttatgttatgccagGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGATGTTACTATTCTCGTGAATTCATCCCCT
                           atctcac  putative branch site (score: 3)
              aaataaatttagaatc  TA-rich tract