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...tgtgattctttttttatcttacatacttaaatgaaaagtgggtctggttagatttcatttggatctcattttcttaaaataatcatttttttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
species | Glycine max |
transcript | GLYMA08G21380.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGEST: gi|13562687|gb|BG550907.1|BG550907
genomic: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAgtatgctctt ... ttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
EST: GAGCCAAAAAATNCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA ATGATTGCATCAGAAGATATAGGGAGGCAGATEST: gi|18732951|gb|BM527341.1|BM527341
genomic: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAgtatgctctt ... ttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGAT
EST: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGEST: gi|8826432|gb|BE210162.1|BE210162
genomic: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAgtatgctctt ... ttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
EST: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGEST: gi|10233365|gb|BE802253.1|BE802253
genomic: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAgtatgctctt ... ttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
EST: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGA ATGATTGCATCACAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
genomic: GAGCCAAAAAATCCACAAAGTCTGCAGTTCTAATGAATCTGGAATCTAGAgtatgctctt ... ttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
ggttagatttcatttggatctcattttcttaaaataatcatttttttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
tcatttttttttttgc CT-rich tract
atctcattttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgattctttttttatcttacatacttaaatgaaaagtgggtctggttagatttcatttggatctcattttcttaaaataatcatttttttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - -tacatac
- - - - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - tctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa