1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctactaggaacacactatattctgcatcctttgactttttttttcctactctgacatccttcaaaagaattattaagctaattccagttgtattttgcagGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAACAAAAAAGAGCTGATATGATCATATCT
species | Glycine max |
transcript | GLYMA08G21360.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAG GCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAAEST: gi|193497169|gb|FK462097.1|FK462097
genomic: CTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGgtatttgctt ... tattttgcagGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAA
EST: CTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAG GCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAA
genomic: CTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGgtatttgctt ... tattttgcagGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAA
ctactctgacatccttcaaaagaattattaagctaattccagttgtattttgcagGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAACAAAAAAGAGCTGATATGATCATATCT
agctaat putative branch site (score: 3)
aaaagaattattaagc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactaggaacacactatattctgcatcctttgactttttttttcctactctgacatccttcaaaagaattattaagctaattccagttgtattttgcagGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAACAAAAAAGAGCTGATATGATCATATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - aacacac
- - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa