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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagcaccgtttggaaactttagtatccttttctttcaattttttttttttaaatcatcgaatttgtaatttgtactaaagtgcatttatttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTGCCAATAATTTACCATGATAGCCAACTAGTTTCGTATGGAGTAGAGGGAA

Basic information

species Glycine max
transcript GLYMA08G21300.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14989999|gb|BI315672.1|BI315672
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|17022499|gb|BM093533.1|BM093533
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|7029108|gb|AW458891.1|AW458891
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|58015895|gb|CX702637.1|CX702637
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|15287557|gb|BI471448.1|BI471448
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|16995707|gb|BM085079.1|BM085079
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|9901421|gb|BE610389.1|BE610389
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|58016178|gb|CX702920.1|CX702920
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|254329843|gb|GR839396.1|GR839396
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|10709600|gb|BF009324.1|BF009324
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTCTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
EST: gi|163926148|gb|EH038402.1|EH038402
EST:     GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAG                         TACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG
genomic: GAATTGATGTTGAAAGGGTCAGACCGTACTATCTGTCCCTCATTGAAAAGgtcagcaccg ... tttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttaaatcatcgaatttgtaatttgtactaaagtgcatttatttgctgcagTACTTCCCTGCAAAGCTGAAGTGGTGAAGAGTTAATTGGAGCCATGAAGTGCCAATAATTTACCATGATAGCCAACTAGTTTCGTATGGAGTAGAGGGAA
                             tactaaa  putative branch site (score: 1)
                                         tttattt  putative PPT
                aatttgtaatttgta  TA-rich tract