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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggcgcggattgataggtaccatgttgctttttttcaccttatcctaaacgttgaacctaggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC

Basic information

species Glycine max
transcript GLYMA08G20980.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20980.2 (Glycine max), 3'ss of exon 10
lower sequence: AT1G73020.2 (Arabidopsis thaliana), 3'ss of exon 10
gtaatggcgcggattgataggtaccatgttgctttttttcaccttatcctaaacgttgaacctaggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC
|||| |    | |||| |  | |    ||  || ||| ||    | | |||| | |||   ||| ||   |  |     | |||||| ||||| || || || ||||||||||| ||||| |||||||||||||   | || ||||| || ||    || ||||| ||||| ||||| || ||| 
gtaa-gaaaagcattgttttgca--gagtcactgtttctc----ttttctaatcattg---ctatggaaattttcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT

upper sequence: GLYMA08G20980.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
gtaatgg-cgcggattgataggtaccatgttgctttttttc-accttat---cctaaacgttgaacct----aggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC
||||||| |  | |||  ||  | |||| ||  |||| ||| ||| | |    ||      |    ||    |    ||||||||||||  ||||| |||||||| || ||||||||| |||| |||||  |||| ||||||  | | || || ||| | |||  ||| ||||||||||| ||||||||||| |
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttttcaccttatcctaaacgttgaacctaggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC
                tcctaaa  putative branch site (score: 2)
                                      tttactttctctcgc  putative PPT
                                      tttacttt  TA-rich tract