Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttctctatttctattcactaagcaaaggttttgtgggctttcatttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTG
Basic information
species | Glycine max |
transcript | GLYMA08G20780.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 20
------------------------------gtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttctctatttctatt-cactaagcaaaggttttgtgggctt-----tcatttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTG
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gtgagcctactcattttaactttctagttcaaagttcaaacaattttacataccaatattcagaaaagaagaggact--tttagcagtaaatcaatcacattattcacatatctgattggtttggttcttcattttgaagGCTCTAGAAAAGTGTCAGCTCAAGGCAACAATCAGCAGTCTTCCAAACTTGCTAGACTCATCTG
upper sequence: GLYMA08G20780.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 9
gtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttctctatttctattcactaagcaaag-gttttgtgggctttcatttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTG
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gtgagccctctc-ctttccagtcatgatctcagtttctgatttaagcca---------atgacgataaattaatcacattatcttatttggttct-ttgttgcagGCTCTAGAGAAGTGCCAGCTTAAGGCCACAATCAGCAGTCTTCCAAACTTGCTAGACTCATCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335548|gb|CO979414.1|CO979414EST: GAAAGAACTTGGACCCTCTATGCCTGTACTCTGATGATGAAATATGGAAG GCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTC
genomic: GAAAGAACTTGGACCCTCTATGCCTGTACTCTGATGATGAAATATGGAAGgtaaatcaac ... atttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttctctatttctattcactaagcaaaggttttgtgggctttcatttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTG
ctttcattttt CT-rich tract
tttcattttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcaactggctctacaattgaaaaaacatgtaataaattgaattgtttttctctatttctattcactaagcaaaggttttgtgggctttcatttttacagGCTTTAGAGAAATGTCAGCTTAAGGCAACAATTAGTAGTCTTCCAAATCTCTTGGACACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT