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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagccttgttcttcaatttatattttatactgggatgtgctaagtactatgctccttgataaaaatattttagggaccagatggctatgtttttatattccctttttttgttgttgacttcttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT

Basic information

species Glycine max
transcript GLYMA08G20320.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204184|gb|BI426952.1|BI426952
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|207758918|gb|GD732633.1|GD732633
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|193715822|gb|FK649013.1|FK649013
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|26048756|gb|CA785209.1|CA785209
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|207693296|gb|GD675991.1|GD675991
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|208300236|gb|GE098909.1|GE098909
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|193523934|gb|FK480027.1|FK480027
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|193501031|gb|FK465024.1|FK465024
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGAACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|207685835|gb|GD669167.1|GD669167
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTT
EST: gi|193304917|gb|FK271772.1|FK271772
EST:     CTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: CTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|193369055|gb|FK338473.1|FK338473
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAG
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAG
EST: gi|207734628|gb|GD709695.1|GD709695
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|298187041|gb|HO034190.1|HO034190
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
EST: gi|14990359|gb|BI316032.1|BI316032
EST:     AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAG                         GATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT
genomic: AGATTATGCTTATTTGAAAAGACTTCTTCGTGACCTTTTCATTCGTGAAGgtttgagcct ... cttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagatggctatgtttttatattccctttttttgttgttgacttcttgcaccagGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTTCAAGTGTCACTGCCCCTGCCCGTGCTATT
                                    tgttgac  putative branch site (score: 3)
                                          cttcttgc  CT-rich tract
          tatgtttttatatt  TA-rich tract