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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG

Basic information

species Glycine max
transcript GLYMA08G18760.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 3'ss of exon 11
-------------------gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatat-tttttgttttgggtgctgggaa-atgctcctgac-tgttgttttcaaattcaac-tccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                    | | |||||  |||  |  |       |||||   || |   |     | | | |||||||    | | ||  | | |||     ||  ||    | || ||||     |||   |    | |    ||  |  |  || || |  |||  ||||||||||||| ||||| |  ||||| || || |||||  | ||||| ||||| |||||||||||||| ||||| || ||||| |  ||||||
gtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttagGTTGGAGCTGAAATTGTAAGGAGAGCGCTGAGCTACCCGCTTAAATTGATTGCTAAGAATGCTGGTGTTAATGGAAGCGTTGTTACCGAGAAG

upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G55490.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtca-tgacttcaaaattg-tgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                                                              |    | | |   || |||| |||  |   ||   |   ||  |  ||  ||  ||| || | | |   |  |||||||||| ||||| || |||||||| || ||||||||  | ||| |||| ||||||||||||||||| ||||| ||||| || || ||||||
------------------------------------------------------------------------------gtaaatcaatcaagtcttcagattttaactcatgaaccttcggtttctctaactttgctgatgattccctttagGTTGGAGCGGATATAGTTAAAAGAGCACTAAGTTACCCCCTAAAACTAATCGCCAAGAATGCTGGTGTTAATGGAAGTGTAGTTAGCGAGAAG

upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                                                  ||| | || ||   ||  || | |||   |    | ||| |       |  |  ||  ||   || | | |   || | |  |||||||||| || ||||| |||||||| || ||||||||| ||||||| || || |||||||||||||| ||||| ||||||||||| ||||||
------------------------------------------------------------------gtgattggcaa-aatcaagaattttgaaattttttgcaaattgcttgctcttactgcattttcaactatttcccatctct--agGTTGGAGCGGAAATTGTTAAAAGAGCACTGAGTTACCCTCTGAAATTGATAGCTAAGAATGCTGGTGTTAATGGAAGTGTTGTCAGCGAGAAG

upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgct--cctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                               || |        |  |||       |  || | |  | ||| ||  |  ||      |  || |         |   | || | ||||    ||||  |   |||||||||||||| ||||| || | |||  | || |||||  |||| ||||| |||||||| |||||||||||||| || |||||||||||||||
-----------------------------------------------gttagtccagaagagttgcacagcagagaaagataacatgaatgaggagtttg---ccgtctgcgggttataacgccattttacaattcatcttaacctc--cagGTTGGAGCTGACATTGTTAAGAAAGCATTGAGCTACCCACTGAAGTTAATCGCCAAGAACGCTGGTGTCAATGGCAGCGTTGTCAGTGAGAAG

upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 11
-------gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaaca-tggtcatgacttcaaaattgtgtttaattt-ttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
        || | | | | ||  ||||||      |  || |  | ||  | |||   |      |  ||||  |  ||   ||||      |    |||    | |||   |   | | | || | ||    | ||| | |  || ||||  ||||||||||||||||||||||| || |||||| | ||||||||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||
gtgatacttgtggc-tgtgttcaatatgggatttgtccaa-taccttgagttttggttttcccaatagtttgaatcatgctgaatgtgttcaaaatgtgtcaatatattggccaggatatagtgtttatcctcttaaagtggacttgaattgattgcagGTTGGAGCTGATATTGTCAAGAGAGCTTTGAGTTACCCTCTGAAGTTAATTGCCAAAAATGCTGGTGTTAATGGAAGTGTGGTCAGTGAGAAG

upper sequence: GLYMA08G18760.1 (Glycine max), 3'ss of exon 10
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 3'ss of exon 7
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaat-tgtgt-ttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                              |||||       || || || ||||  |    |   ||       || | |    |         |  || | ||||      ||| |||   ||  |   | || ||    | || |||||||||| ||||| |||||||   | ||  |  |||||||||||||||| || ||||||||||||||||| || || || || ||   |||||||
-----------------------------gtaagtgat----attttatgctattcctacaatcaagttacaatcaaggtttgacatgaagccgatacaacttaactt--gttatgttcagatctgaattgtctgggtgcctacttctgcagGTTGGCGCTGAGATTGTGAGGCGGGCCTTGTGTTACCCTTTGAAATTGATCGCCAAGAATGCTGGTGTGAACGGAAGCGTGGTGGTTGAGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702280|gb|BW677975.1|BW677975
EST:     AATCAAGGATAGCCTTGATAATGATG-AGAAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAAT
genomic: AATCAAGGATAGCCTTGATAATGATGAAG-AAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAAT
EST: gi|16282149|gb|BI944863.1|BI944863
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|151412595|gb|EV282407.1|EV282407
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|193714808|gb|FK652775.1|FK652775
EST:     CNTC-AAGGTGGNTGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16284130|gb|BI945921.1|BI945921
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAGAA                         GTTGGAGCTGATATTGTGAANAGAGCTCTCAGTTACGCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|209698543|gb|BW652409.1|BW652409
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16278312|gb|BI942837.1|BI942837
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208046514|gb|GD849098.1|GD849098
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|298191386|gb|HO038865.1|HO038865
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTCGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16278884|gb|BI943144.1|BI943144
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|20449400|gb|BQ253524.1|BQ253524
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|120534219|gb|EH262352.1|EH262352
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16282846|gb|BI945236.1|BI945236
EST:     CATCANAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16279729|gb|BI943586.1|BI943586
EST:     CATCAAAGGTGGATGCAATCAATGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|7685797|gb|AW756445.1|AW756445
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|7639932|gb|AW734243.1|AW734243
EST:     GCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208072209|gb|GD870225.1|GD870225
EST:     CAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|17964146|gb|BM270885.1|BM270885
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16284557|gb|BI946152.1|BI946152
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|8402244|gb|BE057878.1|BE057878
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|6718933|gb|AW306580.1|AW306580
EST:     GGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|27427470|gb|CA938990.1|CA938990
EST:     GGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: GGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|254322415|gb|GR837829.1|GR837829
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|6227700|gb|AW156299.1|AW156299
EST:     CTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16344875|gb|BI970470.1|BI970470
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208281737|gb|GE077693.1|GE077693
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|208026723|gb|GD823525.1|GD823525
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16281476|gb|BI944507.1|BI944507
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|16276810|gb|BI942056.1|BI942056
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
EST: gi|151401056|gb|EV270870.1|EV270870
EST:     CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAA                         GTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT
genomic: CATCAAAGGTGGATGCAATCAAGGATAGCCTTGATAATGATGAAGAAAAAgtgagtcatt ... atttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG
                                        gtttaat  putative branch site (score: 4)
                                              tttttgc  CT-rich tract
                             ttcaaaattgtgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcatttatttgatatggagagaatataagtttcctggatgttgtgatattttttgttttgggtgctgggaaatgctcctgactgttgttttcaaattcaactccaaacatggtcatgacttcaaaattgtgtttaatttttgcagGTTGGAGCTGATATTGTGAAAAGAGCTCTTAGTTACCCTTTGAAATTAATTGCCAAGAATGCTGGTGTCAATGGTAGTGTTGTCAGTGAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG