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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgccaggaattctttaggatgaggttctgaattgaacacaaatgctcagtttaacagatttatttatttttcttttatagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT

Basic information

species Glycine max
transcript GLYMA08G18590.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18590.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os12g42160.1 (Oryza sativa), 3'ss of exon 8
----gtattgccaggaattctttaggatgaggttctgaattga-acacaaatgctcagtttaacagatttatttatttttcttttatagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT
     |     ||  | |  |  ||  |      ||| ||     | ||| |  | |       |   || |    |||   | || ||   |  | |||||  | || |  || |||||||| ||||| || ||||| |||||||| ||||| ||||| ||||||||||| || || || ||||| ||
gtaaatcccttcataactagtacagtttatcaacctgtatccttgctcaagtttttaacgatgtaatgttctccgatttc--tctacagAAAAGGTGTTTGAGAAAACTGTGCCTTTTGCAACTTCAGTGCTGGATGGGTACAATGTTTGCATATTTGCTTATGGACAGACGGGCACTGGTAAAACATT

upper sequence: GLYMA08G18590.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G72250.1 (Arabidopsis thaliana), 3'ss of exon 11
-------gtattgccaggaattctttaggatgaggttctgaattgaacacaaatgctcagtttaacagatttatttatttttcttttatagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT
        |     ||   |   |||   |   | ||   | |  ||    |   | |   |  |||  ||  |||  | | |||||| ||||||| |||||||||| || || || ||||| || |||||  | ||||||||||| || ||||| || || ||||| |||||||| || || ||||||||
gtgatttttggcatcaatgaccatttcctacttgctttcta-tgaaatctcatctcaccaatcgacatgtt-gtttcctatacttttacagCTGATGTTTTTGAAGATACTGCTCCCTTTGCTACGTCAGTCATTGATGGATACAACGTTTGCATCTTCGCCTATGGCCAGACTGGTACTGGGAAAACTTT

upper sequence: GLYMA08G18590.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv19s0027g00080.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------gtattgcc-aggaattctttaggatgaggttctgaattgaacacaaatgctcagtttaacagatttatttatttttctttta-tagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT
                                |||| || |   | | | ||  |||    | ||  ||     |  |  ||  || | |    ||  ||| |  || ||| |  ||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||| || || ||||| ||||| |||||||| ||||| || |||||
gtaatcacataaagtaaattttgtttttgttatattccctaaccaatttatataatgttcctttgggtt---ttctcaacctgtgtattatcacttcctttgtgcttgtttgaacagCTGATGTTTTTGAAGACACTGCACCATTTGCAGCCTCAGTTCTAGATGGGTACAATGTCTGTATATTTGCTTATGGGCAGACTGGAACAGGGAAGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaattgaacacaaatgctcagtttaacagatttatttatttttcttttatagCTGATATTTTTGAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGATACAATGTATGCATTTTTGCATATGGACAGACTGGGACAGGAAAAACTTT
                       gtttaac  putative branch site (score: 3)
                                 tttatttatttttctt  putative PPT
                    tcagtttaacagattt  TA-rich tract