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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgctctctactttttagccaatgtagtcttcttttctttctttattttaattggtgaagcgtttaaattcaagttattgaatggacttgttgtatgacatgttgatatcattttatgtacagATTTATTTTCTGCCGATCCGTGATATCTTTTTTCTGCACACCTGAGGAAAGTGAACAGTACCTTCCACTTTGTTTACCCTATCTACCCTCTTCTGTTGCA

Basic information

species Glycine max
transcript GLYMA08G14190.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207699464|gb|GD679868.1|GD679868
EST:     GGCGGCTTATTCTAAG                         ATTTATTTTCTGCCGATCCGTGATA
genomic: GGCGGCTTATTCTAAGgtatttgctc ... ttatgtacagATTTATTTTCTGCCGATCCGTGATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaagttattgaatggacttgttgtatgacatgttgatatcattttatgtacagATTTATTTTCTGCCGATCCGTGATATCTTTTTTCTGCACACCTGAGGAAAGTGAACAGTACCTTCCACTTTGTTTACCCTATCTACCCTCTTCTGTTGCA
                                tgttgat  putative branch site (score: 4)
                                        tcatttt  CT-rich tract
                                  ttgatatcattttat  TA-rich tract