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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgatctttcattcttgtcatcagtatattgattgaataaaaatctgtatttttatcaaaaagaaaaaaacaatggaccactattttaactgttggatcttatggtttgtcatttacatttattttgtagGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGA

Basic information

species Glycine max
transcript GLYMA08G13680.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13680.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 10
--------gtatgtgatctttcattct--tgtcatcagtatattgattgaat--aaaaatctgtatt---tttatcaaa--aagaaaaaaacaatggaccactattttaactgttgg--atcttatggtttgtcatttacatttattttgtagGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGA
          || || ||||| || ||  | | ||||    | |  |||      |||||| ||  |   ||||| |||  ||||| |||   |   |  || |  |  | |||     |  ||   |   |||||||  ||||||  ||||||||||| ||||| ||||||||||   | ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||| ||||||
gtgagtgaccatttgttcttttatcctatttttatcatctaactacttgccctggaaaatcagtgctgggtttataaaataaagaagaaacttacttaagaccagatggaatgtgtatcacttttctgagggtcatttgtatttatcatgtagGGTTACTGGACTGAAAATTGAGCTGTTAGGGGAAACTTCTATTGCATCAACAATTTCATATCTTGACAATGCATTTGTCTATGTTGGCTCAAGCTATGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccactattttaactgttggatcttatggtttgtcatttacatttattttgtagGGTTACGGGACTCAAAATTGAGCCCCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCATTCGTCTACGTTGGTTCAAGTTATGGA
        ttttaac  putative branch site (score: 2)
                                           tttatttt  putative PPT
                              tttgtcatttacattt  TA-rich tract