1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggaaaaatttctataatgtttttagcatgtgatgtccaatcaattataaatcgtgtattcctctttaaattgaatgctctattctgttctgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATTTATTGCATTTGTATCAACCGAGGCAGAGACAGATCAGCCAGCAATTGAA
species | Glycine max |
transcript | GLYMA08G13300.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATNEST: gi|208035181|gb|GD836407.1|GD836407
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATTEST: gi|193547656|gb|FK504601.1|FK504601
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATTEST: gi|4283991|gb|AI440725.1|AI440725
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
EST: GGTGCAAATTATTTTACCACAGGAACCAGT-GGGTTCG-AAGTCAGACAT GTACCTATTTTGTTGTEST: gi|208038580|gb|GD833290.1|GD833290
genomic: GGTGCAAATTATTTTACCACAGAAAC-AGTTGGGT-CGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGT
EST: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACAT GTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
genomic: TCGGTGCAAATTATTTTACCACAGAAACAGTTGGGTCGGAAGTCAGACATgtaagtttac ... tgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATT
tataaatcgtgtattcctctttaaattgaatgctctattctgttctgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATTTATTGCATTTGTATCAACCGAGGCAGAGACAGATCAGCCAGCAATTGAA
ctctattctgttct CT-rich tract
tctttaaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaaaatttctataatgtttttagcatgtgatgtccaatcaattataaatcgtgtattcctctttaaattgaatgctctattctgttctgctgggcagGTACCTATTTTGTTGTTCATATACTCACAATGTTGCTCCAAAGGGAAAATTTATTGCATTTGTATCAACCGAGGCAGAGACAGATCAGCCAGCAATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA