1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaagtatttgctagtttggaaatgtctgccatgatgacttcagattggcagatccttcattattttcaatttttatctaattgatatgatcttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCATATGGCATTTGTGAG
species | Glycine max |
transcript | GLYMA08G13290.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAG CTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCAEST: gi|214008318|gb|DB989860.1|DB989860
genomic: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAGgtgaatttta ... cttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCA
EST: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAG CTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCAEST: gi|21676800|gb|BQ629151.1|BQ629151
genomic: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAGgtgaatttta ... cttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCA
EST: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAG CTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCA
genomic: TTTTCCGGGCTAAAGCCGTTGATGTATCTGGTCACACAATAACTCTGGAGgtgaatttta ... cttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCA
tggcagatccttcattattttcaatttttatctaattgatatgatcttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCATATGGCATTTGTGAG
ttcattattttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtatttgctagtttggaaatgtctgccatgatgacttcagattggcagatccttcattattttcaatttttatctaattgatatgatcttgaaccagCTTACTGGAGATTTGGACAAGATGGTTGCATTGCAGAGATTGTTAGAACCATATGGCATTTGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - -ttgctag
- - - - - - - - - - - - -ctgccat
- - - - - - - - - - - - - - - - - -gacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg