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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatgcttttaatttgatctcaagggtaagtcattacaaagggggtttgttctatttgccctaggtaacttctctcatctttttcgcattgttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACTCAATATCACCCAATTCGCTGAAAAGATT

Basic information

species Glycine max
transcript GLYMA08G09640.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990122|gb|BI315795.1|BI315795
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|192314058|gb|FK008798.1|FK008798
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|254331036|gb|GR842301.1|GR842301
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|58024096|gb|CX710837.1|CX710837
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|31460258|gb|CD402226.1|CD402226
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|58023915|gb|CX710656.1|CX710656
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|17022961|gb|BM093995.1|BM093995
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|7925533|gb|AW831559.1|AW831559
EST:     GACCTTGATGTC-TGTACCCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: GACCTTGATGTCTTGTA-CCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|193416447|gb|FK384953.1|FK384953
EST:     TGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: TGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|57574634|gb|CX547609.1|CX547609
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: gi|15661719|gb|BI699090.1|BI699090
EST:     CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTG                         TTGGTGGAAATATTGCCTTCTACTTTGGGCCTTTTCATTTTGAGGAAGCTT
genomic: CCGACCTTGATGTCTTGTACCATCCCATTCTGAATTTTATGTATTACCTGgtgagtttgt ... gttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttctatttgccctaggtaacttctctcatctttttcgcattgttgctgcagTTGGTGGAAATATTGCCTTCTACTTTGGTCCTTTTCATTTTGAGGAAGCTTCCTCCCAAGCGTGGTATCACTCAATATCACCCAATTCGCTGAAAAGATT
                 aggtaac  putative branch site (score: 3)
                               atcttttt  TA-rich tract