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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtttacaaaatctaaccccactacagttgccaaaactggtctacacgggaacattgatagctgtttcttttatgtagattttgcaactataagctatttactttaaacaatgtgttagcttattttttaaaatatatgcttgagttttgttttattcatggcaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT

Basic information

species Glycine max
transcript GLYMA08G09050.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09050.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g55260.2 (Oryza sativa), 3'ss of exon 9
gtatgttgtttacaaaatctaaccccactacAGTTGCCAAAACTGGTCTACACGGGAACATTGATAGCTGTTTCTTTTATGTAGATTTTGCAACTATAAGCTATTTACTTTAAACAATGTGTTAGCTTATTTTTTAAAATATATGCTTGAGTTTTGTTTTAT-TCATGGCAAACTAAAAGTGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
                                                                     |||  ||||  ||   |||  ||   ||    | |||  ||   |  |  |  || |       | |||| | || | ||  | |||||  |  |  |       ||    |  || ||||||| |||| |||||  | ||||| ||  ||| | ||||||| || ||    |||||||| ||||||||||| ||||| ||||||||||| ||    ||||| |||||
---------------------------------------------------------------------gttagttttg-gttcttttctcagtgatgctatttttttttctgatgaaattataccactgaactgaaaaaaaattcatgc-tattgttacacatttttatgtgataccttttctc-ttgggttgcagAATTGCCCGAGGTTGGTCCTCTCAAACCTGAAGACATCGAAGTTGCTTTGAGGAACACAAGGCCGTCTGCGCATCTCCATGCACATCGCTATGAGAAGTT

upper sequence: GLYMA08G09050.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 3'ss of exon 10
gtatgttgtttacaaaatctaaccccactacAGTTGCCAAAACTGGTCTACACGGGAACATTGATAGCTGTTTCTTTTATGTAGATTTTGCAACTATAAGCTATTTACTT-TAAACAATGTGT-TAGCTTATTTTTTAAAATATATGCTTGAGTTTTGTTTTATTCATGGCAAACTAAAAG--TGATCATTGGGTTACAGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
                                                                                                    | || ||    || | |   ||  || |||  || | |||| |     ||     |  ||| |   |      ||| | ||  |  | ||||| |||||||| |||| || || || ||||||| |  ||| || |||||||| |||||||  |||||||| ||||||||||||||||||| ||||   ||||| |||||
----------------------------------------------------------------------------------------------------ccatctagacatacagagcatgcatatctttcttgtaaaaacaggatttttctaatgctttcaagtaatttgcactgagagattagttattggcttacagAGCTGCCGAAGGTGGGACCAATCAAACATGATGACATAGAGACGGCTTTGAAGAACACAAGACCATCTGCTCATCTCCATGTCCACCGTTATGATAAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707326|gb|BW670618.1|BW670618
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58024174|gb|CX710915.1|CX710915
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58023441|gb|CX710182.1|CX710182
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58024561|gb|CX711302.1|CX711302
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|298186847|gb|HO033946.1|HO033946
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58023989|gb|CX710730.1|CX710730
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58018662|gb|CX705404.1|CX705404
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|208287192|gb|GE089266.1|GE089266
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|207780459|gb|GD750798.1|GD750798
EST:     ACGCTTAATGTCACAACTTGAGCAGAAC-AGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAG
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAG
EST: gi|192331318|gb|FK021015.1|FK021015
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58020971|gb|CX707713.1|CX707713
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|193629981|gb|FK573287.1|FK573287
EST:     TTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCC-AAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: TTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58021730|gb|CX708471.1|CX708471
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|22931036|gb|BU548175.1|BU548175
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
EST: gi|58021561|gb|CX708302.1|CX708302
EST:     ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAG                         AGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA
genomic: ACGCTTAATGTCACAACTTGAGCAGAACCAGGATGTGGTGCCTGAAGAAGgtatgttgtt ... tgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcttgagttttgttttattcatggcaaactaaaagtgatcattgggttacagAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAGACAGCTTTGAGAAACACAAGGCCATCTGCTCATCTCCATGCCCACAAATATGACAAGTT
                             aactaaa  putative branch site (score: 2)
          ttttgttttattcat  TA-rich tract