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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttaatatcatgaacatactgtcatttcatgttttgttttataccttcattccatgttttgtgggataatgcttccgtggcataatacaagttattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAG

Basic information

species Glycine max
transcript GLYMA08G07840.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888387|gb|BQ741600.1|BQ741600
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|209704675|gb|BW675883.1|BW675883
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|58019656|gb|CX706398.1|CX706398
EST:     TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
EST: gi|58019280|gb|CX706022.1|CX706022
EST:     TCCTTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG                         TATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT
genomic: TCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAGgtattgttaa ... tattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattccatgttttgtgggataatgcttccgtggcataatacaagttattgcacagTATTCTGTGACGGAGCATTTCAAGAGTTCAGAGCTGGGTGTTGCAGTTCCTGGAGTTTTCTTCTTTTATGACATATCTCCAATCAAG
                                  ataatacaagttatt  TA-rich tract