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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatatacttgatataaagatcaatatttatcatatttcatgcttaaaagtcccttctattctaattcagcctgaatggttctctctttcttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGC

Basic information

species Glycine max
transcript GLYMA08G07670.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403559|gb|BE059193.1|BE059193
EST:     CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG                         TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
EST: gi|31470792|gb|CD412820.1|CD412820
EST:     CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG                         TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
EST: gi|192307420|gb|FK000762.1|FK000762
EST:     CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG                         TTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG
genomic: CAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTGgtaagtcaac ... ttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagtcccttctattctaattcagcctgaatggttctctctttcttgagtgcagTTGGTAGAGATTGTTCCATCAGCGCTGGTGCTCTTCATATTGCGTAAGCTGCCCCCGAGGCGAGTTTCTGATCAGTACCACCCCATTAAATGAGTTGTGC
              ttctaat  putative branch site (score: 2)
                               tggttctctctttctt  putative PPT
            tattctaatt  TA-rich tract